What i used, is Gparted Live CD, It has this nifty utility, forgot what it is called, but its the first one on the utility list, I had to search the sectors within the HD, once, then after it finished, i had to search deeper for it to find all of my partitions, it did, so i set my main boot partition and my primary ones. Created the MBR for my Vista partition. Loaded the Restore disk, and it booted normally.

It took me ages to find that out. But it has helped a lot!