TimeMachine doesn't backup the bootloader since it's on a separate hidden partition.

To fix, boot your system using the install dvds bootloader (just leave it in the drive and don't press anything). Once you reach the desktop, download and reinstall Chameleon.

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 Mac OS X 10.6.4 Retail || Intel Core2 Duo E8200 2.66GHz || Gigabyte G31M-ES2L || GeForce 6600 GT 128MB || Realtek ALC883 Audio || Realtek RTL8169 LAN || Samsung SpinPoint F1 1TB HD || Sony Dual Layer IDE DVD RW DW-D22A || Apple Aluminium Keyboard || Mighty Mouse

 MacBook Pro || 2.4Ghz Core 2 Duo || 200Gb HD || 2Gb Ram || NVIDIA GeForce 8600M GT

 iPhone 4 || 16Gb